#SNAPGENE VIEWER ALTERNATIVES SOFTWARE#
UGENE is open-source software for DNA and protein sequence visualization, alignment, assembly, and annotation, and it is completely compatible with Bioinformatics methods. The program includes many features that aid in analyzing nucleotide or amino acid alignments and provides maximum flexibility during sequence manipulation. The software is built on an advanced multiple sequence alignment engine, which allows researchers to trace the evolutionary history of a group of related sequences. GeneDoc enables scientists to efficiently perform sequence alignment, display and analyze multiple sequences, and evaluate DNA, protein, and amino acid homologies. It takes a structural format input file, consisting of a multiple sequence alignment and associated tree, and produces a high quality publication-ready image in PNG or GIF format loaded directly into your favorite presentation package or a PostScript file which can be printed on a high-resolution printer.
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The main goal of this application is to create and manipulate multiple sequence alignment graphics such as those produced by ClustalW, MAFFT, and other alignment software. It has been used to create presentations for posters, talks, and scientific journals. GeneDoc is a tool for the visual analysis and editing of multiple sequence alignments. The program allows you to draw the blocks that represent the sequences in the file either from scratch or from a template, and you can also load sequences from various sources. It offers an intuitive graphical interface similar to the one implemented in XiYOS, but it contains an extended set of features, including sequence and alignment viewing and editing, multiple output styles, flexible, interactive alignment editor, simple sequence input, and saving, basic graph plotting. GeneDoc is a full-featured multiple sequence alignment editor, analyzer, and shading utility for Windows.